Penn Arts & Sciences Logo

Home

Monday, July 27, 2015 - 11:00am

 

Presenting reproducible data and research across platforms
July 27, July 29, August 3, August 5
11am-2pm each day (11am-12pm // lunch break // 1pm-2pm)
Instructors: Julian Jenkins III, multidisciplinary researcher  and Christopher Ahern, Penn Linguistics
**This course is free, but space is limited and advanced registration is required. Priority registration will be offered to Penn graduate students and post-docs, and we will register other personnel as space allows.

 

Modern scientific research takes advantage of programs such as Python and R that are open source. As such, they can be modified and shared by the wider community. Additionally, there is added functionality through additional programs and packages, such as IPython, Sweave, and Shiny. These packages can be used to not only execute data analyses, but also to present data and results consistently across platforms (e.g., blogs, websites, repositories and traditional publishing venues).

The goal of the course is to show how to implement analyses and share them using IPython for Python, Sweave and knitr for RStudio to create documents that are shareable and analyses that are reproducible.

Course outline is as follows (four sessions of 2 hours each):

   1)    Use of IPython notebooks to demonstrate and explain code, visualize data, and display analysis results

   2)    Applications of Python modules such as SymPy, NumPy, Pandas, and SciPy

   3)    Use of Sweave to demonstrate and explain code, visualize data, display analysis results, and create documents and presentations

   4)    Integration and execution of IPython and R code and analyses using the IPython notebook
 
To register, please email Jessica Marcus (jmarcus [at] upenn.edu) and include your Penn affiliation in the email.